Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8DB4

Crystal structure of the peanut allergen Ara h 2 bound by two neutralizing antibodies 22S1 and 13T1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2021-04-13
DetectorDECTRIS EIGER X 16M
Wavelength(s)1
Spacegroup nameP 1
Unit cell lengths78.796, 92.177, 96.180
Unit cell angles95.04, 106.03, 108.87
Refinement procedure
Resolution40.750 - 2.300
R-factor0.2121
Rwork0.211
R-free0.24610
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4LLY & 3OB4
RMSD bond length0.004
RMSD bond angle0.675
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.340
High resolution limit [Å]2.3002.300
Rmerge0.0780.772
Rmeas0.0910.902
Rpim0.0460.463
Number of reflections966224898
<I/σ(I)>20.81.6
Completeness [%]91.493.1
Redundancy3.83.7
CC(1/2)0.9940.795
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2770.05 M zinc acetate, 20% PEG3350

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon