8D6E
Crystal Structure of Human Myt1 Kinase domain Bounded with RP-6306
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-09-03 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 51.243, 112.014, 72.978 |
Unit cell angles | 90.00, 109.87, 90.00 |
Refinement procedure
Resolution | 47.820 - 2.150 |
R-factor | 0.1915 |
Rwork | 0.190 |
R-free | 0.21770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3p1a |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.820 | 47.820 | 2.280 |
High resolution limit [Å] | 2.150 | 6.390 | 2.150 |
Rmerge | 0.021 | 0.010 | 1.032 |
Rmeas | 0.029 | 0.014 | 1.408 |
Total number of observations | 144392 | ||
Number of reflections | 40791 | 2757 | 11324 |
<I/σ(I)> | 16.97 | 58.14 | 0.75 |
Completeness [%] | 86.6 | 86.8 | 84.2 |
Redundancy | 1.997 | 1.895 | 2.081 |
CC(1/2) | 1.000 | 0.999 | 0.356 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.25 | 293 | 5.6 to 6.6% PEG3350, 0.2 M Na2SO4, 0.1 M Tris-HCl and 10% EG |