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8D5F

The complex of Gtf2b neoantigen TGAARFDEF Presented by H2-Dd

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-E
Synchrotron siteAPS
Beamline21-ID-E
Temperature [K]100
Detector technologyPIXEL
Collection date2019-04-02
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.98
Spacegroup nameP 21 21 21
Unit cell lengths52.300, 68.860, 109.440
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.233 - 2.310
Rwork0.193
R-free0.19910
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR){DB entry 5KD7
RMSD bond length0.011
RMSD bond angle1.979
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0350)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.2332.390
High resolution limit [Å]2.3102.310
Rmerge0.1200.046
Rmeas0.1430.054
Rpim0.0770.027
Number of reflections1775617756
<I/σ(I)>10.7
Completeness [%]99.2
Redundancy66
CC(1/2)0.9930.996
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.3309.1520% PEG3350, 200 nM sodium tartrate dibasic dihydrate

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PDB entries from 2024-05-15

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