8D5D
Structure of Y430F D-ornithine/D-lysine decarboxylase complex with D-arginine
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 22-ID |
| Synchrotron site | APS |
| Beamline | 22-ID |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2021-06-13 |
| Detector | DECTRIS EIGER X 16M |
| Wavelength(s) | 1.0000 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 141.770, 49.540, 139.560 |
| Unit cell angles | 90.00, 115.93, 90.00 |
Refinement procedure
| Resolution | 48.860 - 1.540 |
| R-factor | 0.1615 |
| Rwork | 0.161 |
| R-free | 0.19270 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 6N2H.pdb |
| Data reduction software | autoPROC |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 48.860 | 1.595 |
| High resolution limit [Å] | 1.540 | 1.540 |
| Number of reflections | 125192 | 9896 |
| <I/σ(I)> | 11.03 | 0.53 |
| Completeness [%] | 96.5 | |
| Redundancy | 15.1 | |
| CC(1/2) | 0.999 | 0.320 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1 M HEPES, pH 7.5, 0.2 M NaOAc, 20% PEG 4000 |






