8D5D
Structure of Y430F D-ornithine/D-lysine decarboxylase complex with D-arginine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-13 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0000 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 141.770, 49.540, 139.560 |
Unit cell angles | 90.00, 115.93, 90.00 |
Refinement procedure
Resolution | 48.860 - 1.540 |
R-factor | 0.1615 |
Rwork | 0.161 |
R-free | 0.19270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6N2H.pdb |
Data reduction software | autoPROC |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.860 | 1.595 |
High resolution limit [Å] | 1.540 | 1.540 |
Number of reflections | 125192 | 9896 |
<I/σ(I)> | 11.03 | 0.53 |
Completeness [%] | 96.5 | |
Redundancy | 15.1 | |
CC(1/2) | 0.999 | 0.320 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1 M HEPES, pH 7.5, 0.2 M NaOAc, 20% PEG 4000 |