8D52
Parathyroid hormone 1 receptor extracellular domain complexed with a peptide ligand containing (2-naphthyl)-beta-3-homoalanine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-04-06 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.920105 |
Spacegroup name | H 3 2 |
Unit cell lengths | 57.383, 57.383, 205.208 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.300 - 2.020 |
R-factor | 0.2072 |
Rwork | 0.204 |
R-free | 0.24400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3h3g |
RMSD bond length | 0.005 |
RMSD bond angle | 0.882 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | PHENIX (1.18rc7_3834) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 68.403 | 2.163 |
High resolution limit [Å] | 2.020 | 2.020 |
Rmerge | 0.072 | 1.123 |
Rmeas | 0.088 | |
Rpim | 0.791 | |
Number of reflections | 7246 | 361 |
<I/σ(I)> | 9.1 | |
Completeness [%] | 81.1 | 22.1 |
Redundancy | 4.2 | 5.1 |
CC(1/2) | 0.997 | 0.551 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 8 | 293 | 28 % v/v PEG Smear Low, 0.1 M tris-HCl pH 8, 0.15 M Sodium citrate, 1% ethylene glycol, 1 mM ZnSO4 |