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8D4Y

C-terminal SANT-SLIDE domain of human Chromodomain-helicase-DNA-binding protein 4 (CHD4)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAUSTRALIAN SYNCHROTRON BEAMLINE MX2
Synchrotron siteAustralian Synchrotron
BeamlineMX2
Temperature [K]100
Detector technologyPIXEL
Collection date2021-11-24
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9537
Spacegroup nameP 1 21 1
Unit cell lengths65.432, 66.665, 99.370
Unit cell angles90.00, 100.77, 90.00
Refinement procedure
Resolution19.900 - 2.900
R-factor0.265
Rwork0.263
R-free0.30120
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Alphafold
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareAuto-Rickshaw
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]48.80948.8093.070
High resolution limit [Å]2.9008.5702.900
Rmerge0.1160.0650.811
Rmeas0.1310.0740.916
Total number of observations82638
Number of reflections186027642791
<I/σ(I)>9.2820.231.71
Completeness [%]98.098.291.7
Redundancy4.4424.1134.569
CC(1/2)0.9940.9920.706
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.3277.150.1 M bicine/Trizma base pH 8.3, 10% w/v PEG 8000, 20% v/v ethylene glycol, 0.1 M mixture of carboxylic acids*, and 20 mM spermidine *Sodium Formate; Ammonium acetate; Sodium citrate tribasic dihydrate; Potassium sodium tartrate tetrahydrate; Sodium oxamate

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PDB entries from 2024-05-15

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