8D1W
Crystal structure of Plasmodium falciparum GRP78 in complex with (2R,3R,4S,5R)-2-(6-amino-8-((2-chlorobenzyl)amino)-9H-purin-9-yl)-5-(hydroxymethyl)tetrahydrofuran-3,4-diol
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-06 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 84.288, 84.288, 292.218 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.660 - 2.100 |
R-factor | 0.19131 |
Rwork | 0.190 |
R-free | 0.22145 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5umb |
RMSD bond length | 0.012 |
RMSD bond angle | 1.780 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.230 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmeas | 0.100 | 0.510 |
Number of reflections | 36996 | 5825 |
<I/σ(I)> | 28.9 | |
Completeness [%] | 100.0 | 100 |
Redundancy | 18.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 298 | 0.7 M (NH4)2SO4, 1.2 M Li2SO4, 0.1 M NaCitrate, pH 5.6 |