8D0Y
Crystal Structure of HIV-1 BG505 SOSIPv8 Trimer in Complex with CD4bs targeting antibody 21N13 and interface targeting antibody 35O22 at 4.7 Angstrom
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-1 |
Synchrotron site | SSRL |
Beamline | BL12-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-06 |
Detector | DECTRIS EIGER2 S 16M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 3 |
Unit cell lengths | 264.672, 264.672, 264.672 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.630 - 4.700 |
R-factor | 0.2698 |
Rwork | 0.268 |
R-free | 0.29780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5cez |
RMSD bond length | 0.004 |
RMSD bond angle | 0.875 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.630 | 5.060 | 4.780 |
High resolution limit [Å] | 4.700 | 4.960 | 4.700 |
Rmerge | 0.240 | 2.880 | 2.900 |
Rmeas | 0.240 | 3.031 | |
Rpim | 0.050 | 0.907 | 1.800 |
Number of reflections | 32440 | 1624 | 1664 |
<I/σ(I)> | 13.6 | ||
Completeness [%] | 98.9 | 100 | 66.2 |
Redundancy | 20.4 | 10.7 | 2.7 |
CC(1/2) | 0.257 | 0.050 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1M sodium acetate, pH5.5,1.75M Ammonium sulfate |