8CM7
W-formate dehydrogenase M405A from Desulfovibrio vulgaris
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-02-16 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.9677 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 64.874, 123.833, 149.891 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 75.058 - 2.117 |
Rwork | 0.197 |
R-free | 0.25180 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6sdr |
RMSD bond length | 0.008 |
RMSD bond angle | 1.547 |
Data reduction software | XDS |
Data scaling software | STARANISO (2.3.79 (20211010)) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 75.058 | 2.298 |
High resolution limit [Å] | 2.117 | 2.117 |
Number of reflections | 47566 | 2379 |
<I/σ(I)> | 8.31 | |
Completeness [%] | 92.3 | |
Redundancy | 6.9 | |
CC(1/2) | 0.994 | 0.613 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 30% PEG 3350, 0.1M Tris-HCl pH 8.0, 1M LiCl |