8BWA
Crystal structure of human Twisted gastrulation protein homolog 1 (TWSG1) in complex with platinum
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-01-31 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.03003 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 98.430, 98.430, 188.160 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.220 - 3.610 |
R-factor | 0.3415 |
Rwork | 0.339 |
R-free | 0.39020 |
Structure solution method | SAD |
RMSD bond length | 0.002 |
RMSD bond angle | 0.596 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | autoSHARP |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 62.720 | 3.670 |
High resolution limit [Å] | 3.610 | 3.610 |
Rmerge | 0.143 | 7.612 |
Rmeas | 0.146 | 7.767 |
Rpim | 0.029 | 1.524 |
Number of reflections | 6653 | 319 |
<I/σ(I)> | 13.6 | 0.6 |
Completeness [%] | 99.5 | 99.7 |
Redundancy | 25.8 | 25.4 |
CC(1/2) | 0.999 | 0.247 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 294 | 0.77 M LiCl, 15.5% w/v PEG 6000, 77 mM HEPES pH 7.0, 5.2% 2,2,2-trifluoroethanol. The crystal was soaked in saturated solution of di-mu-iodobis(ethylenediamine)diplatinum(2) nitrate (PIP) solution before data collection. |