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X-ray structure of human glutamate carboxypeptidase II (GCPII) in complex with an inhibitor 617

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]90
Detector technologyPIXEL
Collection date2015-08-29
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.918
Spacegroup nameI 2 2 2
Unit cell lengths101.281, 130.000, 159.492
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.250 - 1.580
R-factor0.18082
Rwork0.181
R-free0.19789
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)3bi1
RMSD bond length0.011
RMSD bond angle1.508
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwareREFMAC (5.8.0135)
Refinement softwareREFMAC (5.8.0135)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.670
High resolution limit [Å]1.5801.580
Rmerge0.0550.710
Rmeas0.0610.793
Number of reflections14372522658
<I/σ(I)>17.861.98
Completeness [%]99.597.9
Redundancy5.24.98
CC(1/2)0.9990.805
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP829333% (v/v) pentaerythritol propoxylate PO/OH 5/4 1 % (w/v) PEG 3350 100 mM Tris-HCl, pH 8.0

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