8BI2
Syk kinase domain in complex with macrocyclic inhibitor 20a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-01-23 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.95373 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 39.990, 84.985, 90.125 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 61.830 - 1.508 |
R-factor | 0.205 |
Rwork | 0.203 |
R-free | 0.23550 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2bbgn |
RMSD bond length | 0.008 |
RMSD bond angle | 0.900 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | AMoRE |
Refinement software | BUSTER |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 62.000 | 1.630 |
High resolution limit [Å] | 1.510 | 1.510 |
Rmerge | 0.076 | 1.800 |
Rmeas | 0.148 | |
Rpim | 0.045 | |
Number of reflections | 38677 | 1934 |
<I/σ(I)> | 7 | 1.6 |
Completeness [%] | 92.3 | |
Redundancy | 10.1 | 10.3 |
CC(1/2) | 0.997 | 0.601 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.4 | 274 | 0.1M Na3Cit pH 6.4, 16% PEG3350, 0.2M KH2PO4 |