8BBM
DNA binding domain of J-DNA Binding Protein 1 (JBP1)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-23 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.98 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 68.286, 68.286, 185.842 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.590 - 1.950 |
R-factor | 0.20453 |
Rwork | 0.202 |
R-free | 0.25194 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xse |
RMSD bond length | 0.013 |
RMSD bond angle | 1.621 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.600 | 2.000 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmeas | 0.157 | 5.033 |
Number of reflections | 19605 | 53016 |
<I/σ(I)> | 17.5 | |
Completeness [%] | 100.0 | |
Redundancy | 38.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 15-17% Peg 6000, 0.1M Sodium iodide or 15-17% Peg, 0.2M potassium nitrate |