8B4T
Human cathepsin B in complex with the carbamate inhibitor 7
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-10 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.918 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 30.750, 81.550, 93.460 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.730 - 1.450 |
R-factor | 0.1788 |
Rwork | 0.177 |
R-free | 0.20810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ipp |
RMSD bond length | 0.013 |
RMSD bond angle | 1.801 |
Data reduction software | XDS (3.1.5) |
Data scaling software | XSCALE |
Phasing software | MOLREP (11.7.03) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.730 | 46.730 | 1.540 |
High resolution limit [Å] | 1.450 | 4.330 | 1.450 |
Rmerge | 0.176 | 0.048 | 3.120 |
Rmeas | 0.183 | 0.050 | 3.250 |
Number of reflections | 42360 | 1745 | 6631 |
<I/σ(I)> | 11.36 | 48.16 | 0.78 |
Completeness [%] | 98.8 | 98.4 | 96.9 |
Redundancy | 12.968 | 11.392 | 12.544 |
CC(1/2) | 0.998 | 0.998 | 0.397 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 291 | 0.1 M Sodium Acetate pH 5.5, 20% PEG 2000 MME |