8APW
Crystal Structure of H. influenzae TrmD in complex with Compound 30
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-09-25 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | H 3 2 |
Unit cell lengths | 94.367, 94.367, 178.289 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 47.228 - 1.800 |
Rwork | 0.168 |
R-free | 0.20270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4yvh |
RMSD bond length | 0.026 |
RMSD bond angle | 2.445 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.228 | 1.840 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.070 | 0.019 |
Rmeas | 0.078 | 0.021 |
Rpim | 0.033 | 0.010 |
Number of reflections | 28538 | 1642 |
<I/σ(I)> | 26.1 | |
Completeness [%] | 99.8 | |
Redundancy | 10.4 | 8.2 |
CC(1/2) | 0.999 | 0.999 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | 20% PEG3350 0.1 M HEPES, pH 7.5 0.1 M potassium citrate tribasic |