8AP3
Structure of A. thaliana MIF/D-DT-like protein-2 (MDL2)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-05-15 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.999 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.218, 79.243, 84.600 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.320 - 1.400 |
R-factor | 0.1854 |
Rwork | 0.184 |
R-free | 0.20770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7mse |
RMSD bond length | 0.009 |
RMSD bond angle | 1.088 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.18_3845: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.320 | 1.450 |
High resolution limit [Å] | 1.400 | 1.400 |
Rmerge | 0.040 | 0.690 |
Rmeas | 0.042 | 0.722 |
Rpim | 0.012 | 0.208 |
Number of reflections | 61915 | 6095 |
<I/σ(I)> | 31.44 | |
Completeness [%] | 100.0 | 100 |
Redundancy | 12.7 | 11.8 |
CC(1/2) | 1.000 | 0.907 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 50 mM Tris pH 8.0 2.25 M Ammonium sulfate |