Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8AHZ

Native VirD of Streptomyces virginiae

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSOLEIL BEAMLINE PROXIMA 2
Synchrotron siteSOLEIL
BeamlinePROXIMA 2
Temperature [K]80
Detector technologyPIXEL
Collection date2017-09-29
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.953709
Spacegroup nameP 41 21 2
Unit cell lengths84.310, 84.310, 230.190
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution57.780 - 1.700
R-factor0.1602
Rwork0.159
R-free0.17980
Structure solution methodSAD
RMSD bond length0.009
RMSD bond angle1.517
Data reduction softwareXDS
Data scaling softwareAimless (0.5.29)
Phasing softwarePHENIX
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]59.6202.1001.810
High resolution limit [Å]1.7002.0001.760
Rmerge0.0710.0300.753
Rmeas0.0740.0320.788
Rpim0.0210.0150.226
Number of reflections8760211105171
<I/σ(I)>19.5
Completeness [%]99.099.985.9
Redundancy12.610.211.6
CC(1/2)0.9970.9990.810
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.529320% PEG 400, 20% PEG 800, 100 mM Tris-HCl

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon