Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8A4I

Crystal structure of SALL4 zinc finger cluster 4 with AT-rich DNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2021-04-27
DetectorDECTRIS EIGER2 S 16M
Wavelength(s)1.2822
Spacegroup nameP 1
Unit cell lengths39.026, 66.111, 77.938
Unit cell angles73.04, 76.43, 76.14
Refinement procedure
Resolution73.367 - 2.760
R-factor0.2476
Rwork0.247
R-free0.25350
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)IDEAL DNA
RMSD bond length0.006
RMSD bond angle0.825
Data reduction softwareXDS
Data scaling softwareAimless (0.7.4)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]73.3673.337
High resolution limit [Å]2.7602.760
Rmerge0.4520.906
Rmeas0.5411.100
Number of reflections6179309
<I/σ(I)>3.1221.903
Completeness [%]0.80.2832
Redundancy3.283.07
CC(1/2)0.8900.669
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP629850 mM MES pH 6.0, 20 % PEG 3350, 60 mM MgCl2

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon