7ZVM
Thermococcus barophilus phosphomannose isomerase protein structure at 1.6 A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-02-20 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.98 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 48.482, 52.410, 112.868 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.580 - 1.580 |
R-factor | 0.1754 |
Rwork | 0.173 |
R-free | 0.21200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | alphafold2 |
RMSD bond length | 0.017 |
RMSD bond angle | 1.857 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.580 | 1.670 |
High resolution limit [Å] | 1.580 | 1.580 |
Number of reflections | 38008 | 1050 |
<I/σ(I)> | 7.66 | |
Completeness [%] | 98.9 | |
Redundancy | 3.39 | |
CC(1/2) | 0.997 | 0.180 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 298 | 0.12 M monosaccharide mix, 0.1M buffer system 2 pH 8.5 and 50% V/V MPD (F7 Morpheus conditions) |