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7ZRX

F61V Cytochrome c prime beta from Methylococcus capsulatus (Bath) Chemically Reduced Ferrous State

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2019-09-20
DetectorDECTRIS EIGER2 XE 16M
Wavelength(s)0.9795
Spacegroup nameP 21 3
Unit cell lengths105.537, 105.537, 105.537
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.200 - 2.040
R-factor0.1855
Rwork0.184
R-free0.21540
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6hih
RMSD bond length0.012
RMSD bond angle2.279
Data reduction softwareDIALS
Data scaling softwareAimless (0.7.7)
Phasing softwareREFMAC
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]47.20047.2002.090
High resolution limit [Å]2.0409.1202.040
Rmerge0.0500.0320.670
Rmeas0.0620.0400.832
Rpim0.0360.0230.485
Total number of observations652297854311
Number of reflections246993151706
<I/σ(I)>8.723.31.3
Completeness [%]97.997.691.6
Redundancy2.62.52.5
CC(1/2)0.9980.9950.622
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2912 microlitres of 15 mg/ml protein in 0.1 M HEPES buffer, pH 7.5, mixed with with an equivalent volume of reservoir solution containing 0.01 M ZnSO4, 30% PEG 550 (v/v) and 0.1 M MES, pH 6.5. Cryoprotection in ML plus 10% glycerol

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PDB entries from 2024-11-13

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