7ZRX
F61V Cytochrome c prime beta from Methylococcus capsulatus (Bath) Chemically Reduced Ferrous State
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-20 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 3 |
Unit cell lengths | 105.537, 105.537, 105.537 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.200 - 2.040 |
R-factor | 0.1855 |
Rwork | 0.184 |
R-free | 0.21540 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6hih |
RMSD bond length | 0.012 |
RMSD bond angle | 2.279 |
Data reduction software | DIALS |
Data scaling software | Aimless (0.7.7) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.200 | 47.200 | 2.090 |
High resolution limit [Å] | 2.040 | 9.120 | 2.040 |
Rmerge | 0.050 | 0.032 | 0.670 |
Rmeas | 0.062 | 0.040 | 0.832 |
Rpim | 0.036 | 0.023 | 0.485 |
Total number of observations | 65229 | 785 | 4311 |
Number of reflections | 24699 | 315 | 1706 |
<I/σ(I)> | 8.7 | 23.3 | 1.3 |
Completeness [%] | 97.9 | 97.6 | 91.6 |
Redundancy | 2.6 | 2.5 | 2.5 |
CC(1/2) | 0.998 | 0.995 | 0.622 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 2 microlitres of 15 mg/ml protein in 0.1 M HEPES buffer, pH 7.5, mixed with with an equivalent volume of reservoir solution containing 0.01 M ZnSO4, 30% PEG 550 (v/v) and 0.1 M MES, pH 6.5. Cryoprotection in ML plus 10% glycerol |