7ZQI
MHC class I from a wild bird in complex with a nonameric peptide P2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-12 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97940 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 39.202, 48.780, 202.135 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.580 - 2.150 |
R-factor | 0.18245 |
Rwork | 0.180 |
R-free | 0.22937 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5gjx |
RMSD bond length | 0.013 |
RMSD bond angle | 1.837 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 67.380 | 2.210 |
High resolution limit [Å] | 2.150 | 2.150 |
Number of reflections | 22044 | 1759 |
<I/σ(I)> | 12.1 | 1.9 |
Completeness [%] | 99.9 | 99.8 |
Redundancy | 13 | 13.4 |
CC(1/2) | 0.999 | 0.848 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | 100 mM Hepes/MOPS, pH 7.0, 20 mM MgCl2, 40 mM CaCl2, 25 % (v/v) MPD, 25 % (w/v) PEG 1000, 25 % (w/v) PEG 3350 |