7ZCA
Crystal structure of the F191M/F201A variant of Variovorax paradoxus indole monooxygenase (VpIndA1) in complex with benzyl phenyl sulfoxide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-04-28 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.79687 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 93.589, 93.589, 111.152 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.840 - 1.680 |
R-factor | 0.1563 |
Rwork | 0.155 |
R-free | 0.17440 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 7z4x |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.790 | 46.790 | 1.710 |
High resolution limit [Å] | 1.680 | 9.030 | 1.680 |
Rmerge | 0.053 | 0.032 | 1.678 |
Rmeas | 0.055 | 0.033 | 2.050 |
Rpim | 0.013 | 0.007 | 1.150 |
Total number of observations | 884857 | 9033 | 1964 |
Number of reflections | 58636 | 487 | 771 |
<I/σ(I)> | 27.6 | 87.7 | 0.5 |
Completeness [%] | 90.3 | 99.6 | 23.5 |
Redundancy | 15.1 | 18.5 | 2.5 |
CC(1/2) | 1.000 | 0.999 | 0.209 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 293 | 100 mM Na-acetate pH 5, 1400 mM Na-malonate, 1 mM DTT, 3 mM FAD, 1 mM 6-bromoindole, cryo: 15 % (v/v) ethylene glycol |