7Z2L
Crystal structure of L-Kynurenine in the active site of human Indoleamine-2,3-dioxygenase 1 (hIDO1)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-27 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.980 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 81.000, 116.280, 217.590 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.230 - 2.560 |
R-factor | 0.1834 |
Rwork | 0.180 |
R-free | 0.24410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7nge |
RMSD bond length | 0.009 |
RMSD bond angle | 0.979 |
Data reduction software | XDS (1.19.2_4158) |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.230 | 2.654 |
High resolution limit [Å] | 2.560 | 2.562 |
Rpim | 0.096 | 0.530 |
Number of reflections | 66614 | 6308 |
<I/σ(I)> | 13.33 | 2.22 |
Completeness [%] | 99.2 | 93.96 |
Redundancy | 13.6 | |
CC(1/2) | 0.998 | 0.855 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.2 | 293 | Well : 0.1M Phosphate buffer, pH= 6.2, PEG 3350 = 16% Protein: 5mM Hepes, 200mM NaCl, 5mM DTT |