7YZZ
Crystal structure of Vibrio alkaline phosphatase in 0.5 M NaCl
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, DESY BEAMLINE P11 |
Synchrotron site | PETRA III, DESY |
Beamline | P11 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-04-20 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.033 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 77.080, 84.740, 85.230 |
Unit cell angles | 90.00, 113.48, 90.00 |
Refinement procedure
Resolution | 39.310 - 1.290 |
R-factor | 0.121 |
Rwork | 0.121 |
R-free | 0.13870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3e2d |
RMSD bond length | 0.010 |
RMSD bond angle | 1.106 |
Data reduction software | XDS (Feb 5, 2021) |
Data scaling software | XSCALE (Feb 5, 2021) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (dev_3958) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.310 | 1.320 |
High resolution limit [Å] | 1.290 | 1.290 |
Rmeas | 0.057 | |
Number of reflections | 1574856 | 53734 |
<I/σ(I)> | 15.32 | |
Completeness [%] | 96.8 | |
Redundancy | 6.45 | |
CC(1/2) | 0.999 | 0.584 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | 26% PEG3350, 0.5 M NaCl, 1.0 M Tris pH 7.0 |