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7YXT

Crystal structure of human Indoleamine-2,3-dioxygenase 1 (hIDO1) with different conformations for G261-G265 fragment

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSOLEIL BEAMLINE PROXIMA 2
Synchrotron siteSOLEIL
BeamlinePROXIMA 2
Temperature [K]100
Detector technologyPIXEL
Collection date2021-07-27
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.98011
Spacegroup nameP 21 21 2
Unit cell lengths81.040, 117.610, 217.180
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.070 - 2.480
R-factor0.1993
Rwork0.196
R-free0.25860
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7nge
RMSD bond length0.009
RMSD bond angle1.006
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]49.0702.574
High resolution limit [Å]2.4802.485
Rmerge0.1681.460
Rmeas0.175
Rpim0.0480.408
Number of reflections738947203
<I/σ(I)>11.011.73
Completeness [%]99.798.66
Redundancy13.313.5
CC(1/2)0.9980.802
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.2298Well: 0.1M KH2PO4/K2HPO4 buffer at pH 6.2 supplemented with 17% of PEG 3350 solution Protein: 5 mM HEPES/NaOH pH 7.6, 200 mM NaCl, 5 mM DTT

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PDB entries from 2024-09-11

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