7YXT
Crystal structure of human Indoleamine-2,3-dioxygenase 1 (hIDO1) with different conformations for G261-G265 fragment
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-27 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.98011 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 81.040, 117.610, 217.180 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.070 - 2.480 |
R-factor | 0.1993 |
Rwork | 0.196 |
R-free | 0.25860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7nge |
RMSD bond length | 0.009 |
RMSD bond angle | 1.006 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.070 | 2.574 |
High resolution limit [Å] | 2.480 | 2.485 |
Rmerge | 0.168 | 1.460 |
Rmeas | 0.175 | |
Rpim | 0.048 | 0.408 |
Number of reflections | 73894 | 7203 |
<I/σ(I)> | 11.01 | 1.73 |
Completeness [%] | 99.7 | 98.66 |
Redundancy | 13.3 | 13.5 |
CC(1/2) | 0.998 | 0.802 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.2 | 298 | Well: 0.1M KH2PO4/K2HPO4 buffer at pH 6.2 supplemented with 17% of PEG 3350 solution Protein: 5 mM HEPES/NaOH pH 7.6, 200 mM NaCl, 5 mM DTT |