7YRP
Crystal structure of VIM-28 metallo-beta-lactamase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-22 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.000 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 139.360, 45.910, 103.260 |
Unit cell angles | 90.00, 103.59, 90.00 |
Refinement procedure
Resolution | 63.483 - 2.000 |
Rwork | 0.172 |
R-free | 0.20370 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2whg |
RMSD bond length | 0.007 |
RMSD bond angle | 1.390 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 67.730 | 2.110 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.102 | 0.494 |
Number of reflections | 43247 | 6128 |
<I/σ(I)> | 8.3 | 2.4 |
Completeness [%] | 99.7 | |
Redundancy | 3.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 289 | 1.4 M ammonium citrate |