7YQA
Crystal structure of D-threonine aldolase from Chlamydomonas reinhardtii
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NW12A |
Synchrotron site | Photon Factory |
Beamline | AR-NW12A |
Temperature [K] | 95 |
Detector technology | CCD |
Collection date | 2015-11-27 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 1.00000 |
Spacegroup name | P 1 |
Unit cell lengths | 64.792, 74.096, 89.939 |
Unit cell angles | 77.07, 69.34, 71.93 |
Refinement procedure
Resolution | 83.460 - 1.850 |
R-factor | 0.2187 |
Rwork | 0.217 |
R-free | 0.24900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4v15 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.384 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 83.460 | 42.281 | 1.950 |
High resolution limit [Å] | 1.850 | 5.850 | 1.850 |
Rmerge | 0.024 | 0.142 | |
Rmeas | 0.062 | 0.034 | 0.201 |
Rpim | 0.044 | 0.024 | 0.142 |
Total number of observations | 5549 | 26299 | |
Number of reflections | 111548 | 3079 | 16831 |
<I/σ(I)> | 9.2 | 20.5 | 3 |
Completeness [%] | 88.6 | 77.4 | 91.3 |
Redundancy | 1.6 | 1.8 | 1.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 295 | PEG 1540, 2-methyl-2,4-pentanediol, Magnesium nitrate |