7YP6
Crystal structure of elaiophylin glycosyltransferase in complex with UDP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-09-29 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 2 2 |
Unit cell lengths | 66.796, 131.856, 225.173 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 64.120 - 2.600 |
R-factor | 0.2134 |
Rwork | 0.212 |
R-free | 0.24680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7yp3 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.529 |
Data reduction software | DIALS |
Data scaling software | SCALA (3.3.16) |
Phasing software | PHENIX |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 65.230 | 65.230 | 2.670 |
High resolution limit [Å] | 2.600 | 11.630 | 2.600 |
Rmerge | 0.104 | 0.026 | 1.111 |
Rmeas | 0.120 | 0.030 | 1.280 |
Rpim | 0.059 | 0.016 | 0.627 |
Total number of observations | 249252 | 2727 | 18448 |
Number of reflections | 62124 | 791 | 4553 |
<I/σ(I)> | 8.4 | 23.8 | 1.3 |
Completeness [%] | 99.9 | 98.2 | 100 |
Redundancy | 4 | 3.4 | 4.1 |
CC(1/2) | 0.996 | 0.996 | 0.524 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.2 | 293 | 21% polyethylene glycol 3350, 0.15 M DL-Malic pH 7.2, 24% propylene glycol |