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7YN1

Crystal structure of selenomethionine labeled CcbD

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-1A
Synchrotron sitePhoton Factory
BeamlineBL-1A
Temperature [K]100
Detector technologyPIXEL
Collection date2019-08-12
DetectorDECTRIS EIGER X 4M
Wavelength(s)0.9788
Spacegroup nameP 1
Unit cell lengths52.683, 90.932, 98.563
Unit cell angles90.27, 103.67, 90.19
Refinement procedure
Resolution26.130 - 2.500
R-factor0.2043
Rwork0.203
R-free0.24030
Structure solution methodSAD
RMSD bond length0.002
RMSD bond angle0.523
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwareCRANK2
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.8802.560
High resolution limit [Å]2.5002.500
Rmerge0.0930.580
Number of reflections607014419
<I/σ(I)>18.94.5
Completeness [%]98.898.4
Redundancy11.811.9
CC(1/2)0.9990.935
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2980.02 M Tris-HCl (pH 6.7), 0.16 M magnesium chloride, 10% w/v PEG 8000.

222036

PDB entries from 2024-07-03

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