7YM9
Crystal structure of a PET hydrolase from Cryptosporangium aurantiacum
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-05-25 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.97934 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 82.309, 82.449, 87.391 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 26.230 - 1.340 |
R-factor | 0.1726 |
Rwork | 0.172 |
R-free | 0.18270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lul |
RMSD bond length | 0.016 |
RMSD bond angle | 2.008 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.360 |
High resolution limit [Å] | 1.340 | 3.640 | 1.340 |
Rmerge | 0.082 | 0.053 | 0.512 |
Rmeas | 0.086 | 0.056 | 0.538 |
Rpim | 0.025 | 0.017 | 0.164 |
Total number of observations | 1647419 | ||
Number of reflections | 133383 | 6956 | 6605 |
<I/σ(I)> | 10 | ||
Completeness [%] | 99.9 | 98.5 | 100 |
Redundancy | 12.4 | 10.8 | 10.4 |
CC(1/2) | 0.997 | 0.948 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 12% (w/v) PEG3350, 0.1 M Sodium malonate pH4.0 |