7YKN
Crystal structure of (6-4) photolyase from Vibrio cholerae
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU PhotonJet-R |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-03-10 |
Detector | RIGAKU HyPix-3000 |
Wavelength(s) | 1.54 |
Spacegroup name | P 64 2 2 |
Unit cell lengths | 200.751, 200.751, 77.023 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 24.620 - 2.500 |
R-factor | 0.2274 |
Rwork | 0.225 |
R-free | 0.28320 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4dja |
Data reduction software | CrysalisPro |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 24.620 | 2.580 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 1.382 | 3.765 |
Rmeas | 1.394 | 3.796 |
Rpim | 0.178 | 0.485 |
Number of reflections | 32043 | 3130 |
<I/σ(I)> | 5.61 | 1.7 |
Completeness [%] | 99.6 | 99.97 |
Redundancy | 60.4 | |
CC(1/2) | 0.955 | 0.546 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 277 | 5%(v/v) PEG400, 2 M ammonium citrate/citric acid pH 7.5, 1 M sodium sulfate decahydrate |