7YDF
Crystal structure of human SARS2 catalytic domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-04 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97853 |
Spacegroup name | P 31 1 2 |
Unit cell lengths | 89.850, 89.850, 86.220 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.920 - 2.800 |
R-factor | 0.2905 |
Rwork | 0.289 |
R-free | 0.33250 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1wle |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | MOLREP |
Refinement software | PHENIX (1.13) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.920 | 44.920 | 2.950 |
High resolution limit [Å] | 2.800 | 8.850 | 2.800 |
Rmerge | 0.170 | 0.080 | 2.572 |
Rmeas | 0.180 | 0.086 | 2.713 |
Rpim | 0.059 | 0.029 | 0.859 |
Total number of observations | 2908 | 14262 | |
Number of reflections | 18615 | 341 | 1446 |
<I/σ(I)> | 8.3 | 21.8 | 1 |
Completeness [%] | 97.6 | 99.1 | 100 |
Redundancy | 9.6 | 8.5 | 9.9 |
CC(1/2) | 0.997 | 0.997 | 0.354 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | Na citrate, PEG4000 |