7YDD
Crystal structure of the P450 BM3 heme domain mutant F87A/T268P/V78I in complex with N-imidazolyl-pentanoyl-L-phenylalanine,propylbenzene and hydroxylamine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL02U1 |
Synchrotron site | SSRF |
Beamline | BL02U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-28 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 58.443, 148.259, 63.899 |
Unit cell angles | 90.00, 99.71, 90.00 |
Refinement procedure
Resolution | 37.508 - 1.663 |
R-factor | 0.1567 |
Rwork | 0.156 |
R-free | 0.19300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1fag |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 74.260 | 74.260 | 1.730 |
High resolution limit [Å] | 1.640 | 5.180 | 1.640 |
Rmerge | 0.052 | 0.035 | 0.489 |
Rmeas | 0.063 | 0.042 | 0.584 |
Rpim | 0.035 | 0.023 | 0.315 |
Total number of observations | 13495 | 53509 | |
Number of reflections | 218554 | 4098 | 16824 |
<I/σ(I)> | 11.8 | 26.4 | 2.3 |
Completeness [%] | 88.2 | 96.7 | 87.7 |
Redundancy | 3.1 | 3.3 | 3.2 |
CC(1/2) | 0.997 | 0.996 | 0.770 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.2 M Ammonium acetate, 0.2 M Magnesium chloride hexahydrate, 0.1 M HEPES pH7.5, 25% PEG3350 |