7XW1
The crystal structure of AhpD from Pseudomonas aeruginosa
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-16 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9785 |
Spacegroup name | P 63 2 2 |
Unit cell lengths | 92.976, 92.976, 65.957 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.880 - 2.360 |
R-factor | 0.2552 |
Rwork | 0.249 |
R-free | 0.31270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2o4d |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHASER |
Refinement software | PHENIX (1.20_4459) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.880 | 19.880 | 2.450 |
High resolution limit [Å] | 2.360 | 8.840 | 2.360 |
Rmerge | 0.270 | 0.201 | 2.953 |
Rmeas | 0.277 | 0.208 | 3.082 |
Rpim | 0.062 | 0.052 | 0.854 |
Total number of observations | 142387 | 2544 | 7571 |
Number of reflections | 7200 | 163 | 652 |
<I/σ(I)> | 7.8 | 14.4 | 0.9 |
Completeness [%] | 98.4 | 91.5 | 86.5 |
Redundancy | 19.8 | 15.6 | 11.6 |
CC(1/2) | 0.984 | 0.974 | 0.310 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | 2.4 M Sodium malonate pH 7.0 |