7XVJ
Crystal structure of CdpNPT in complex with harmol
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-1A |
Synchrotron site | Photon Factory |
Beamline | BL-1A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-05-20 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.052000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 84.265, 158.669, 161.432 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.970 - 2.400 |
R-factor | 0.1866 |
Rwork | 0.184 |
R-free | 0.22300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4e0u |
RMSD bond length | 0.003 |
RMSD bond angle | 0.541 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.970 | 2.440 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.207 | 1.229 |
Rmeas | 0.223 | 1.322 |
Number of reflections | 163438 | 63798 |
<I/σ(I)> | 9.7 | 2.5 |
Completeness [%] | 100.0 | 100 |
Redundancy | 13.8 | 14.3 |
CC(1/2) | 0.996 | 0.788 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 0.2 M ammonium phosphate dibasic, 20% (w/v) PEG3350 |