7X1B
Crystal structure of peptide KAGQVVTI in complex with HLA-B5801
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE TPS 05A |
Synchrotron site | NSRRC |
Beamline | TPS 05A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-11-21 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.442, 81.715, 109.234 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.268 - 1.399 |
R-factor | 0.1548 |
Rwork | 0.154 |
R-free | 0.17870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7wzz |
RMSD bond length | 0.008 |
RMSD bond angle | 1.084 |
Data reduction software | HKL-2000 |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.268 | 1.449 |
High resolution limit [Å] | 1.399 | 1.399 |
Number of reflections | 87950 | 8489 |
<I/σ(I)> | 19.42 | |
Completeness [%] | 98.0 | |
Redundancy | 7.3 | |
CC(1/2) | 1.000 | 0.648 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.9 | 293 | 0.2 M Sodium thiocyanate, 20% w/v Polyethylene glycol 3350 |