7WZG
Cypemycin N-terminal methyltransferase CypM
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2021-06-28 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9792 |
Spacegroup name | H 3 |
Unit cell lengths | 245.111, 245.111, 81.653 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 30.090 - 2.000 |
R-factor | 0.1967 |
Rwork | 0.195 |
R-free | 0.23780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Alphafold2 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | BALBES |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.030 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.161 | |
Number of reflections | 121720 | 7270 |
<I/σ(I)> | 14.2 | |
Completeness [%] | 90.4 | |
Redundancy | 1.6 | |
CC(1/2) | 0.988 | 0.780 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | Final optimized conditions for YunM with SAM contained 1800 mM Ammonium sulfate, 100 mM CAPS/ Sodium hydroxide pH 10.4, 100 mM Lithium sulfate, and yielded square crystals. |