7WJP
Structure of PadR-like protein from Listeria monocytogenes
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2021-06-01 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.97933 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 72.182, 72.182, 46.670 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.090 - 2.250 |
R-factor | 0.2282 |
Rwork | 0.225 |
R-free | 0.28850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5zqh |
RMSD bond length | 0.007 |
RMSD bond angle | 0.937 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.290 |
High resolution limit [Å] | 2.250 | 2.250 |
Rmerge | 0.073 | 0.387 |
Number of reflections | 6256 | 188 |
<I/σ(I)> | 56.6 | 3.25 |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 13.5 | 12.9 |
CC(1/2) | 1.000 | 0.983 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 291 | 1 M lithium chloride, 0.1 M MES, pH 6.5, 17% polyethylene glycol 6000 |