7W7R
High resolution structure of a fish aquaporin reveals a novel extracellular fold.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-04 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.911647 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 113.670, 178.100, 177.900 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 84.360 - 3.460 |
R-factor | 0.2721 |
Rwork | 0.271 |
R-free | 0.29910 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1j4n |
RMSD bond length | 0.003 |
RMSD bond angle | 0.704 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 95.818 | 95.818 | 3.650 |
High resolution limit [Å] | 3.460 | 10.940 | 3.460 |
Rmerge | 0.089 | 0.832 | |
Rmeas | 0.202 | 0.114 | 0.942 |
Rpim | 0.095 | 0.068 | 0.432 |
Total number of observations | 107214 | 3353 | 14473 |
Number of reflections | 23598 | 814 | 3367 |
<I/σ(I)> | 4.5 | 12.9 | 1.3 |
Completeness [%] | 98.8 | 97.4 | 97.9 |
Redundancy | 4.5 | 4.1 | 4.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277.15 | reservoir solution: 0.3M Lithium sulfate, 0.1M ADA (pH 6.5), 30% v/v PEG 400. Prior to setting up the crystallization drops, 4 micro liter of the reservoir solution was mixed with 1 micro liter 30% w/v Dextran sulfate sodium salt Mr 5000. Crystallization drops were set up by mixing the reservoir/additive mixture with protein at 1:1 or 2:1 ratio and the drops were left to equilibrate against 0.5 milliliter reservoir at room temperature and crystal grew in cold room (4 degree) |