7W3D
Crystal structure of BRD4 bromodomain 1 (BD1) in complex with N2-(1,2,3-benzotriazol-5-yl)-N3-(dimethylsulfamoyl)-N6-[(2S)-1-methoxypropan-2-yl]pyridine-2,3,6-triamine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-10-08 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.97857 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 36.991, 45.339, 78.197 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.460 - 1.980 |
R-factor | 0.276 |
Rwork | 0.273 |
R-free | 0.32500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2oss |
RMSD bond length | 0.010 |
RMSD bond angle | 1.870 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.030 |
High resolution limit [Å] | 1.980 | 2.000 |
Rmerge | 0.058 | 0.747 |
Rmeas | 0.061 | 0.787 |
Rpim | 0.017 | 0.238 |
Number of reflections | 9173 | 355 |
<I/σ(I)> | 43.28125 | 2.62 |
Completeness [%] | 95.8 | 74.9 |
Redundancy | 12.1 | 9.8 |
CC(1/2) | 1.000 | 0.944 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.4 | 287 | 6M sodium formate, 10% glycerol |