7VVA
Pseudouridine bound structure of Pseudouridine kinase (PUKI) from Escherichia coli strain B
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-11-11 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.97932 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 71.954, 271.889, 101.202 |
Unit cell angles | 90.00, 110.91, 90.00 |
Refinement procedure
Resolution | 33.641 - 2.750 |
R-factor | 0.29677572334 |
Rwork | 0.296 |
R-free | 0.32486 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3kzh |
RMSD bond length | 0.003 |
RMSD bond angle | 0.802 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.850 |
High resolution limit [Å] | 2.750 | 2.750 |
Number of reflections | 92181 | 9234 |
<I/σ(I)> | 7.75 | |
Completeness [%] | 99.7 | |
Redundancy | 3.5 | |
CC(1/2) | 0.954 | 0.342 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 295 | 0.1M lithium chloride, 0.1M MES (pH6.0), 18% PEG 6,000 |