7VSD
E. coli Ribonuclease HI in complex with one Mg2+ (2)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL45XU |
Synchrotron site | SPring-8 |
Beamline | BL45XU |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2021-04-07 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 85.363, 85.363, 77.798 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.690 - 1.700 |
R-factor | 0.1879 |
Rwork | 0.186 |
R-free | 0.23000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4z0u |
RMSD bond length | 0.016 |
RMSD bond angle | 1.513 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.690 | 1.730 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.129 | 0.950 |
Rmeas | 0.140 | 1.049 |
Rpim | 0.056 | 0.442 |
Number of reflections | 32240 | 1677 |
<I/σ(I)> | 10.4 | |
Completeness [%] | 99.9 | |
Redundancy | 11.2 | |
CC(1/2) | 0.997 | 0.934 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 293 | 0.2 M ammonium acetate, 0.1 M sodium citrate tribasic dihydrate pH 5.6, 30% w/v polyethylene glycol 4,000 |