7VS8
Crystal structure of P domain from norovirus GI.9 capsid protein in complex with Lewis b antigen.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2019-02-20 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 183.749, 76.464, 103.281 |
Unit cell angles | 90.00, 124.20, 90.00 |
Refinement procedure
Resolution | 41.193 - 2.400 |
R-factor | 0.1663 |
Rwork | 0.165 |
R-free | 0.19560 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7vp0 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.973 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASES |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.490 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.073 | 0.333 |
Rmeas | 0.086 | 0.395 |
Number of reflections | 45674 | 4263 |
<I/σ(I)> | 18.9 | |
Completeness [%] | 98.2 | |
Redundancy | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9 | 298 | magnesium chloride, Bicine, pH 9.0 |