7VRK
crystal structure of BRD2-BD1 in complex with purine derivative
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-09-08 |
Detector | RIGAKU HyPix-6000HE |
Wavelength(s) | 1.54056 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 113.492, 55.303, 67.499 |
Unit cell angles | 90.00, 94.06, 90.00 |
Refinement procedure
Resolution | 24.850 - 2.480 |
R-factor | 0.1885 |
Rwork | 0.186 |
R-free | 0.23640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6jke |
RMSD bond length | 0.009 |
RMSD bond angle | 0.944 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 24.850 | 2.540 |
High resolution limit [Å] | 2.480 | 2.500 |
Rmerge | 0.099 | 0.232 |
Number of reflections | 14382 | 564 |
<I/σ(I)> | 19.29 | |
Completeness [%] | 96.1 | 74.4 |
Redundancy | 4.1 | 3.3 |
CC(1/2) | 1.000 | 0.990 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 300 | PEG MME 5000, 0.1M MES |