Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7VPF

Crystal structure of a novel putative sugar isomerase from the psychrophilic bacterium Paenibacillus sp. R4

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPAL/PLS BEAMLINE 5C (4A)
Synchrotron sitePAL/PLS
Beamline5C (4A)
Temperature [K]95
Detector technologyCCD
Collection date2018-11-02
DetectorADSC QUANTUM 315r
Wavelength(s)0.97940
Spacegroup nameH 3
Unit cell lengths141.932, 141.932, 76.701
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution26.823 - 2.983
R-factor0.2167
Rwork0.214
R-free0.27120
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3qc0
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareMOLREP
Refinement softwarePHENIX (1.14_3260)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00010.0003.050
High resolution limit [Å]2.9807.3402.980
Rmerge0.1120.0970.375
Rmeas0.1180.1020.394
Rpim0.0360.0330.122
Total number of observations117028
Number of reflections11523639759
<I/σ(I)>34.4
Completeness [%]98.381.499.7
Redundancy10.210.110.1
CC(1/2)0.9890.962
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2930.2 M Sodium Fluoride, 0.1 M Bis-Tris propane (pH 7.5), 20% PEG 3350

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon