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7VPC

Neryl diphosphate synthase from Solanum lycopersicum

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL32XU
Synchrotron siteSPring-8
BeamlineBL32XU
Temperature [K]80
Detector technologyPIXEL
Collection date2021-07-28
DetectorDECTRIS EIGER X 9M
Wavelength(s)1.0
Spacegroup nameC 1 2 1
Unit cell lengths98.643, 49.464, 119.494
Unit cell angles90.00, 91.21, 90.00
Refinement procedure
Resolution49.360 - 1.940
R-factor0.20298
Rwork0.200
R-free0.25502
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5hxt
RMSD bond length0.008
RMSD bond angle1.509
Data reduction softwareDIALS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.050
High resolution limit [Å]1.9401.940
Rmerge0.3201.405
Rmeas0.3511.556
Rpim0.2050.929
Number of reflections8364313527
<I/σ(I)>5.611.07
Completeness [%]99.398.9
Redundancy3.162.99
CC(1/2)0.9290.523
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7293PEG 3350, DL-malic acid

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