Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7VPB

Crystal structure of a novel hydrolase in apo form

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]100
Detector technologyPIXEL
Collection date2021-07-04
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1.0
Spacegroup nameP 32
Unit cell lengths71.607, 71.607, 87.327
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution23.440 - 1.680
R-factor0.1562
Rwork0.155
R-free0.17690
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6sbn
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]30.00030.0001.740
High resolution limit [Å]1.6803.6201.680
Rmerge0.1440.0850.745
Rmeas0.1510.0890.785
Rpim0.0440.0260.243
Total number of observations639478
Number of reflections5699757185729
<I/σ(I)>3.4
Completeness [%]99.999.999.8
Redundancy11.211.69.9
CC(1/2)0.9960.820
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.529520% PEG 8000, 0.2M calcium acelate, 0.1M sodium cacodylate

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon