7VPA
Crystal structure of Ple629 from marine microbial consortium
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-05 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 32 |
Unit cell lengths | 73.927, 73.927, 90.737 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 28.660 - 2.350 |
R-factor | 0.2038 |
Rwork | 0.200 |
R-free | 0.27010 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6sbn |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.19) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.430 |
High resolution limit [Å] | 2.350 | 5.060 | 2.350 |
Rmerge | 0.225 | 0.121 | 0.679 |
Rmeas | 0.237 | 0.128 | 0.718 |
Rpim | 0.074 | 0.040 | 0.230 |
Total number of observations | 238395 | ||
Number of reflections | 22794 | 2208 | 2288 |
<I/σ(I)> | 7.9 | ||
Completeness [%] | 98.6 | 95.3 | 100 |
Redundancy | 10.5 | 10.6 | 9.5 |
CC(1/2) | 0.986 | 0.720 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 295 | 30% PEG 8000, 0.2M ammonium acetate, 0.1M tri-Sodium citrate dihydrate, pH 5.6 |