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7VOA

Crystal structure of SARS-CoV-2 RBD in complex with aRBD5

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-D
Synchrotron siteAPS
Beamline21-ID-D
Temperature [K]190
Detector technologyPIXEL
Collection date2021-05-07
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1
Spacegroup nameP 21 21 21
Unit cell lengths53.440, 87.700, 89.050
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.822 - 1.800
R-factor0.1884
Rwork0.186
R-free0.22620
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6w41
RMSD bond length0.016
RMSD bond angle1.356
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (dev_2481)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]45.82245.8221.850
High resolution limit [Å]1.8008.0501.800
Rmerge0.1020.0682.424
Rmeas0.1070.0722.525
Total number of observations500053
Number of reflections386505072755
<I/σ(I)>13.3433.631.17
Completeness [%]97.898.495.4
Redundancy12.93810.67912.642
CC(1/2)0.9980.9950.589
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.5291.150.1M Sodium cacodylate pH 5.5, 25%(w/v) PEG 4000

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