7VMK
Crystal structure of tubulin with 3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-10-27 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.97853 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 104.831, 157.513, 182.187 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.730 - 2.500 |
R-factor | 0.1948 |
Rwork | 0.194 |
R-free | 0.23240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4i55 |
Data reduction software | XDS |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.19_4092) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.540 |
High resolution limit [Å] | 2.500 | 6.780 | 2.500 |
Rmerge | 0.165 | 0.040 | 1.365 |
Rmeas | 0.172 | 0.042 | 1.437 |
Rpim | 0.048 | 0.012 | 0.442 |
Total number of observations | 1325667 | ||
Number of reflections | 104668 | 5573 | 5161 |
<I/σ(I)> | 4 | ||
Completeness [%] | 100.0 | 99.9 | 99.8 |
Redundancy | 12.7 | 12.5 | 9.8 |
CC(1/2) | 0.999 | 0.661 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | 6% polyethylene glycol 4000, 8% glycerol, 0.1 M MES, 30 mM CaCl2, 30 mM MgCl2, pH 6.7 |